Sunday, May 25, 2014

Which Gene Shall Be Chosen??

     As we continue to uncover and discover the secrets of the living universe, we have to pay homage to the little organisms for paving the way; making it all the easier to "take on the world". The Drosophila are one such organisms. The genomic studies of the Drosophila alone have creative breakthroughs in understanding what genes do and their implications to other living beings.
      I am to look into one specific Drosophila gene and break it down to to its structure, function, and applications it may have on other living organisms. I have utilized the online article search from the National University online library, as well as looking at 3rd party sources, such as NCBI and sdbonline.org to find and understand the extremely long list of Drosophila genes. The main problem, however, is that I have narrowed it down to three genes that I find equally interesting and impressive, but cannot choose a single one. The genes I am looking at are the hippo(Hpo), hephaestus(heph), and Adh transcription factor 1(Adf1) genes. One deals with cell restriction and apoptosis. Another is a protein that is helpful for wing development. Last one is involved in neuronal differentiation and function.
 

   The first gene, hpo, located in the nucleus and cytoplasm of the cell, works with other genes (salvador, warts) to restrict cell growth and promotes cell death by decreasing the level of an ubiquitin ligase, which functions as an inhibitor of apoptosis. Restricting cell growth is monumentally important in ensuring that the final size of each organ is appropriate to the specific animal. The balance between proliferation and cell death is crucial and needs to be controlled and coordinated by developmental cues so that the animal's body parts reach the right size and shape. Without the hpo gene, and ones like it, cell proliferation will get out of control and reduce the rate of apoptosis. That would lead to an increase in organ size, which can cause severe problems in the organism.
   

     Secondly, there is the heph gene, which is responsible for attenuating Notch activity after ligand-dependent activation during wing development. Notch is a transmembrane receptor that is responsible for lateral inhibition and cell fate choices. The first heph alleles was identified in a genetic screen for loci required for spermatogenesis. Other heph alleles have been found that affect wing margin and wing vein pattern formation. This gene encodes the apparent homolog of mammalian polypyrimidine tract binding protein (PTB), which acts a transcriptional activator, controls alternative exon selections, translational control or internal ribosome entry site use, and mRNA stability and localization. Studies have shown that cloned organisms that lack the heph gene tend to be wingless or have cut wings, induced ectopic wing margin, inhibit wing-vein formation and have increased Notch activity. This shows that though it does not seem detrimental to the survival of the organism, it in fact is key to the correct development of the characteristic that is described in its name, the fruit FLY.
 

   Lastly, there is the Adh transcription factor 1 (Adf1). It was first identified as a factor that bound the distal promoter of the gene for alcohol dehydrogenase. It is involved in terminal stages of neuronal differentiation and function. The Adf-1 reveals that its DNA-binding is a distantly related member of the helix-turn-helix family, though reavels no similarities to known transcriptional activation domains. This means that it may function through a novel transactivation domain, such as nalyot, a olfactory memory mutant. Studies have shown that Adf-1 mutants have normal memory starting out, but their long-term memory is affected. Adf-1 shows widespread spatiotemporal expression, yet mutant allele show no noticeable complications in morphology of the nervous system. Studies also show that Adf-1 plays a major role in the modulation of synaptic growth. That is a lot of scientific jargon, but even if someone who isn't up-to-date with the most recent genomic language reads this, they will understand that this sequence is very important in the neural functions of the Drosophila species.
      As I mentioned earlier, each of these three sequences are complex and essential, not to mention very interesting. I have barely scratched the surface with any one of these choices, but they all have my undivided attention and I am diving into more and more of each one. Even though I can choose only one for my research, I have a feeling I will be keeping a keen eye on all the different genes that help show how and why what we see, is. Which one to choose?
     

3 comments:

  1. Aaron, you did your homework very well! One suggestion is that you change the color of the letters to something lighter, it was a bit hard to read. As for your genes, I personally would go for hpo, for no other reason that it seems to be more straightforward. Second choice would be Adf, and I would stay away from heph...just because the Notch signaling pathway is really complicated. One thing I discovered that there is a human gene called heph, but it is not an ortholog to the Drosophila heph (the human ortholog has a different name). In any case, I am glad you went that deep- good luck with the decision!

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  2. Hi Aaron. First off, awesome post! It is reader friendly and I do like your choice of genes. Quite intriguing! Bad news, I do agree with the professor. You should probably make your background lighter. Now back to the good news. In my opinion, I believe you should choose HPO gene. It's easy to understand, it's very interesting, and it kind of makes you ponder about this gene. This gene regulates mesodermal development and if a severe mutation of this gene occurs, how large can organs grow? Will this affect their ability to eat? To reproduce? Just something to think about! Good luck :)

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    Replies
    1. You have a variety of choices you can make, hopefully you decide on which you want to do your project on. Does the hpo gene passed down to the next generation or is it envirnmental that triggers the gene? Or, both?

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